ASCEC & COSMIC User Manual GitHub
Automated configurational sampling and topological screening of molecular clusters Química Física Teórica Universidad de Antioquia, Colombia

Simulation Box

Box Suggestion — adjust as needed

Molecule → XYZ Converter

Enter any PubChem identifier (name, SMILES, CAS, InChI) to generate 3D coordinates.
Download .mol from Novoprolabs and drop it on the preview.
Periodic Table

Molecule Preview

Generate a molecule or drop a .mol file here

Sampling Mode

Annealing Theory Level

Quenching & Box Settings

Geometry Optimization

Geometry Refinement

Energy Refinement

COSMIC Screening

Pipeline Overview

Annealing PM3
Geometry Optimization GFN2-xTB
COSMIC 1 th=auto
Geometry Refinement B97-3c
COSMIC 2 th=auto
Results Final PES

Advanced ASCEC Configuration

Complete control over annealing, optimization, cosmic, and rescue behavior. Use the User Manual for parameter-level details.

Pipeline Overview

Annealing PM3
Geometry Optimization GFN2-xTB
COSMIC 1 th=auto
Geometry Refinement B3LYP
COSMIC 2 th=auto
Results Final PES

Annealing Theory Level

Quenching & Packing

Geometry Optimization

Geometry Optimization Input Preview

Geometry Refinement

Geometry Refinement Input Preview

Energy Refinement

Energy Refinement Input Preview

COSMIC Screening

COSMIC 1 (after optimization)

COSMIC 2 (after refinement)

Recovery Mode

COSMIC Weights

Tolerances

Molecule → XYZ Converter

For complex molecules, download .mol and drop on the viewer.

Generate a molecule or drop a .mol file here

Simulation Box

Complete .asc File Preview

Protocol Builder

Define the workflow stages. For docs, see the User Manual.

Protocol Preview

⚙️ Installation

Quick Start for Linux (bash): install once, then run your simulations with the configured aliases.

ASCEC requires Python 3.9+ (3.11 recommended) and uses ORCA as backend for the default workflow.

Warning
ORCA 6.0 is not supported due to parser limitations. Use the latest ORCA 6.1.1 (Linux).
The manual also includes ORCA installation instructions for Linux.

Option 1: Automatic "One-Click" Installation (Recommended)

What this script does automatically:

1) installs Miniconda if missing, 2) creates Python 3.11 environment (py11), 3) installs dependencies, 4) clones ASCEC into ~/software/ascec04, and 5) updates aliases/variables in ~/.bashrc.

1. Download the installation script
wget https://raw.githubusercontent.com/manuel2gl/qft-cosmic-ascec/main/install.sh
2. Run the script
bash install.sh
3. Reload your terminal configuration
source ~/.bashrc
Manual setup: open the User Manual and follow Step-by-Step Conda Installation.

Examples

Water Hexamer (B97-3c Refinement Theory Level)

Water hexamer most stable motifs
Most stable motifs (top 3)
Water hexamer ensemble
Hexamer ensemble

Formic Acid (B97-3c Refinement Theory Level)

Formic acid global minimum
Global minimum
Formic acid ensemble
Formic ensemble

ASCEC Workflow Visuals

ASCEC annealing representation
ASCEC annealing representation
COSMIC clustering dendrogram
COSMIC clustering example (H9)